Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_752

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9119 and 9120 are separated by 180 nucleotides9120 and 9121 are separated by 751 nucleotides mRNA_751: 9119 - K19476 IST1 vacuolar protein sorting-associated protein IST1, at 1,793,395 to 1,794,980 9119 mRNA_752: 9120 - K12822 RBM25, S164 RNA-binding protein 25, at 1,795,161 to 1,797,625 9120 mRNA_753: 9121 - K02737 PSMB5 20S proteasome subunit beta 5, at 1,798,377 to 1,799,752 9121

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,794,202 + 9119 mRNA_751 0.51 -0.4
1,794,214 + 9119 mRNA_751 0.52 +0.1
1,794,355 - 9119 mRNA_751 0.61 +0.7
1,794,612 - 9119 mRNA_751 0.77 +0.1
1,794,628 - 9119 mRNA_751 0.78 -0.3
1,794,639 - 9119 mRNA_751 0.78 +1.7
1,794,916 + +0.4
1,795,121 + -0.8
1,795,390 - -0.7
1,795,980 - 9120 mRNA_752 0.33 +0.1
1,796,701 + 9120 mRNA_752 0.62 -1.4
1,796,833 - 9120 mRNA_752 0.68 -0.1
1,797,164 + 9120 mRNA_752 0.81 -1.8
1,797,235 + 9120 mRNA_752 0.84 -0.6
1,797,558 + -0.3
1,797,558 - +0.2
1,797,573 - -0.1
1,797,573 + +0.8
1,797,581 - -0.8
1,797,799 + -0.9
1,797,876 + +0.1
1,797,963 - -1.1
1,798,130 + -1.2
1,798,151 + -0.4
1,798,206 + -0.6
1,798,313 + +1.1

Or see this region's nucleotide sequence