Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_778

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9145 and 9146 are separated by 292 nucleotides9146 and 9147 are separated by 138 nucleotides mRNA_777: 9145 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 1,845,505 to 1,850,431 9145 mRNA_778: 9146 - K14548 UTP4, CIRH1A U3 small nucleolar RNA-associated protein 4, at 1,850,724 to 1,853,969 9146 mRNA_779: 9147 - Hypothetical Protein, at 1,854,108 to 1,855,117 9147

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,849,731 + 9145 mRNA_777 0.86 +0.6
1,849,758 - 9145 mRNA_777 0.86 +1.8
1,849,768 + 9145 mRNA_777 0.87 -0.8
1,849,791 + 9145 mRNA_777 0.87 -1.5
1,849,902 + 9145 mRNA_777 0.89 -1.2
1,849,924 + 9145 mRNA_777 0.90 -0.2
1,850,214 + +0.0
1,850,217 - +0.6
1,850,624 - -0.1
1,854,184 + -0.6
1,854,203 - -0.7
1,854,254 + 9147 mRNA_779 0.14 -0.9
1,854,287 - 9147 mRNA_779 0.18 +0.4
1,854,712 + 9147 mRNA_779 0.60 -1.3
1,854,804 - 9147 mRNA_779 0.69 -0.3
1,854,818 - 9147 mRNA_779 0.70 +1.9
1,854,866 + 9147 mRNA_779 0.75 -1.5

Or see this region's nucleotide sequence