Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_805

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9172 and 9173 are separated by 434 nucleotides9173 and 9174 are separated by 273 nucleotides mRNA_804: 9172 - K17794 TIM23 mitochondrial import inner membrane translocase subunit TIM23, at 1,911,921 to 1,912,961 9172 mRNA_805: 9173 - K09191 GTF3A general transcription factor IIIA, at 1,913,396 to 1,915,422 9173 mRNA_806: 9174 - KOG1515 Arylacetamide deacetylase, at 1,915,696 to 1,917,845 9174

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,915,423 + +0.2
1,915,480 - +0.5
1,915,860 + -1.2
1,916,118 - 9174 mRNA_806 0.20 -0.8
1,916,120 - 9174 mRNA_806 0.20 +0.4
1,916,134 - 9174 mRNA_806 0.20 -0.6
1,916,327 - 9174 mRNA_806 0.29 -0.4
1,916,402 - 9174 mRNA_806 0.33 -0.9

Or see this region's nucleotide sequence