Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_852

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9219 and 9220 are separated by 73 nucleotides9220 and 9221 are separated by 308 nucleotides mRNA_851: 9219 - HMMPfam-Lipase (class 3)-PF01764,SUPERFAMILY--SSF53474, at 2,039,418 to 2,042,658 9219 mRNA_852: 9220 - K01923 purC phosphoribosylaminoimidazole-succinocarboxamide synthase, at 2,042,732 to 2,043,876 9220 mRNA_853: 9221 - K13125 NOSIP nitric oxide synthase-interacting protein, at 2,044,185 to 2,045,369 9221

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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2,041,758 - 9219 mRNA_851 0.72 +0.0
2,041,973 + 9219 mRNA_851 0.79 -0.5
2,042,352 - -0.4
2,042,473 + -0.3
2,042,543 + +0.8
2,042,665 - -0.3
2,044,018 + -1.2
2,044,128 + +0.1
2,044,138 - -1.0
2,044,288 + -0.5
2,044,420 + 9221 mRNA_853 0.20 -1.2
2,044,866 + 9221 mRNA_853 0.57 -1.7
2,044,874 + 9221 mRNA_853 0.58 -0.2

Or see this region's nucleotide sequence