Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_895

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9262 and 9263 are separated by 81 nucleotides9263 and 9264 are separated by 251 nucleotides mRNA_894: 9262 - K01694 TRP tryptophan synthase, at 2,135,144 to 2,138,242 9262 mRNA_895: 9263 - Hypothetical Protein, at 2,138,324 to 2,139,177 9263 mRNA_896: 9264 - Hypothetical Protein, at 2,139,429 to 2,140,849 9264

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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2,138,228 - +0.2
2,138,420 - 9263 mRNA_895 0.11 -0.7
2,138,577 + 9263 mRNA_895 0.30 +0.4
2,139,175 + +0.4
2,139,291 + -0.2
2,139,568 + -0.6
2,139,875 + 9264 mRNA_896 0.31 +0.7
2,139,893 + 9264 mRNA_896 0.33 +0.3

Or see this region's nucleotide sequence