Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_958

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9325 and 9326 are separated by 545 nucleotides9326 and 9327 are separated by 182 nucleotides mRNA_957: 9325 - K07160 K07160 UPF0271 protein, at 67,059 to 67,959 9325 mRNA_958: 9326 - K14541 DUR1 urea carboxylase / allophanate hydrolase, at 68,505 to 72,950 9326 mRNA_959: 9327 - Hypothetical Protein, at 73,133 to 74,885 9327

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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67,540 - 9325 mRNA_957 0.53 +0.6
67,541 + 9325 mRNA_957 0.53 +0.4
67,567 - 9325 mRNA_957 0.56 +0.6
67,590 + 9325 mRNA_957 0.59 -0.9
67,706 + 9325 mRNA_957 0.72 -0.9
67,709 - 9325 mRNA_957 0.72 +0.3
67,719 - 9325 mRNA_957 0.73 +0.3
67,751 + 9325 mRNA_957 0.77 -1.5
68,023 - -0.6
68,047 + -0.5
68,132 + -0.7
68,141 - +0.2
68,156 + -0.5
68,166 - +0.0
68,167 - +0.2
68,189 - +0.2
68,340 - -1.3
68,448 - -0.6
68,470 - +0.7
68,476 + +1.0
68,493 + -1.2
68,624 - -0.1
68,680 - +1.8
68,727 - +0.7
68,784 + -0.9
68,882 + +1.4
68,917 + -0.0
68,930 + +1.1
69,200 - 9326 mRNA_958 0.16 +0.1
69,221 + 9326 mRNA_958 0.16 +0.8
69,250 + 9326 mRNA_958 0.17 +0.2
69,272 + 9326 mRNA_958 0.17 +0.1
69,389 + 9326 mRNA_958 0.20 +0.7
69,490 - 9326 mRNA_958 0.22 -0.4
69,625 + 9326 mRNA_958 0.25 +0.8
69,637 - 9326 mRNA_958 0.25 -1.0
69,661 + 9326 mRNA_958 0.26 +0.6
69,665 - 9326 mRNA_958 0.26 +0.3
69,758 - 9326 mRNA_958 0.28 -0.1
69,778 - 9326 mRNA_958 0.29 -1.7
69,795 - 9326 mRNA_958 0.29 +0.1
69,912 - 9326 mRNA_958 0.32 -0.3
69,973 + 9326 mRNA_958 0.33 +1.4
70,227 - 9326 mRNA_958 0.39 -0.9
70,361 + 9326 mRNA_958 0.42 +0.2
70,416 - 9326 mRNA_958 0.43 -0.6
70,857 - 9326 mRNA_958 0.53 -0.3
70,961 - 9326 mRNA_958 0.55 -0.1
70,964 - 9326 mRNA_958 0.55 +0.8
71,595 + 9326 mRNA_958 0.70 -0.3
71,603 + 9326 mRNA_958 0.70 -0.0
71,630 - 9326 mRNA_958 0.70 -0.3
71,687 + 9326 mRNA_958 0.72 +0.1
71,695 + 9326 mRNA_958 0.72 +1.9
71,705 + 9326 mRNA_958 0.72 +0.3
71,732 - 9326 mRNA_958 0.73 -0.3
71,746 + 9326 mRNA_958 0.73 -1.0
71,753 + 9326 mRNA_958 0.73 -0.4
71,784 + 9326 mRNA_958 0.74 -0.0
71,990 + 9326 mRNA_958 0.78 -0.6
72,096 - 9326 mRNA_958 0.81 +0.3
72,108 + 9326 mRNA_958 0.81 +1.0
72,183 - 9326 mRNA_958 0.83 -1.0
72,340 + 9326 mRNA_958 0.86 -2.5
72,875 - +1.3
72,910 + +0.4
72,924 + -0.7
72,926 + -0.3
72,928 - -0.9
73,084 + +1.2
73,203 - +0.8
73,678 + 9327 mRNA_959 0.31 +1.6
73,722 + 9327 mRNA_959 0.34 -1.0
73,780 - 9327 mRNA_959 0.37 +0.8
73,945 - 9327 mRNA_959 0.46 +0.5

Or see this region's nucleotide sequence