Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_962

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9329 and 9330 are separated by 164 nucleotides9330 and 9331 are separated by 560 nucleotides mRNA_961: 9329 - Hypothetical Protein, at 81,243 to 82,808 9329 mRNA_962: 9330 - Hypothetical Protein, at 82,973 to 83,563 9330 mRNA_963: 9331 - K15109 SLC25A20_29, CACT, CACL, CRC1 solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29, at 84,124 to 85,910 9331

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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82,037 - 9329 mRNA_961 0.51 -2.9
82,609 + 9329 mRNA_961 0.87 +0.1
82,898 - -0.7
82,923 + +0.0
83,069 - 9330 mRNA_962 0.16 -0.3
83,202 + 9330 mRNA_962 0.39 -1.1
83,218 + 9330 mRNA_962 0.41 +0.2
83,218 - 9330 mRNA_962 0.41 +0.5
83,225 + 9330 mRNA_962 0.43 -1.1
83,225 + 9330 mRNA_962 0.43 +0.0
83,373 + 9330 mRNA_962 0.68 -0.4
83,388 + 9330 mRNA_962 0.70 +1.0
83,394 + 9330 mRNA_962 0.71 -1.6
83,506 - -0.3
83,515 - +0.5
83,659 + -0.3
83,676 + -0.2
83,678 - -0.8
83,685 + +1.0
83,731 + +0.1
83,733 - +0.4
83,738 + -0.8
83,738 - +0.7
83,741 + +0.7
83,746 - -0.4
83,753 - -1.3
83,753 - -0.4
83,769 + -1.8
83,769 - +0.3
83,769 - -2.0
83,772 - -0.0
83,776 + -1.2
83,806 - -0.1
83,814 + -0.3
83,814 - -1.3
83,818 - -3.1
83,833 + -0.6
83,846 + +0.5
83,857 - -0.3
83,865 + -0.6
83,878 + -1.7
83,948 + +0.0
83,968 + -1.6
84,094 + +1.1
84,110 - +0.0
84,118 - -1.3

Or see this region's nucleotide sequence