Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1023

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9390 and 9391 are separated by 629 nucleotides9391 and 9392 are separated by 428 nucleotides mRNA_1022: 9390 - KOG1550 Extracellular protein SEL-1 and related proteins, at 224,870 to 227,887 9390 mRNA_1023: 9391 - K08272 CAB39, MO25 calcium binding protein 39, at 228,517 to 230,203 9391 mRNA_1024: 9392 - HMMPfam-Thaumatin family-PF00314,PIRSF--PIRSF002703,PRINTS-Pathogenesis-related protein signature-PR00347,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 230,632 to 231,986 9392

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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227,537 + 9390 mRNA_1022 0.88 +0.5
227,674 - +0.9
227,950 - -0.2
228,243 + -0.7
228,257 - -1.2
228,385 - -0.9
230,212 - -1.7
230,354 + +0.5
230,464 - -0.2
230,495 - +0.5
230,510 - +0.4
230,890 + 9392 mRNA_1024 0.19 -0.2
230,901 + 9392 mRNA_1024 0.20 -0.0
231,023 - 9392 mRNA_1024 0.29 +1.6
231,044 - 9392 mRNA_1024 0.30 -1.3
231,064 + 9392 mRNA_1024 0.32 +0.6

Or see this region's nucleotide sequence