Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1027

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9394 and 9395 are separated by 890 nucleotides9395 and 9396 are separated by 400 nucleotides mRNA_1026: 9394 - HMMPfam-Protein of unknown function (DUF3317)-PF11779, at 233,944 to 234,631 9394 mRNA_1027: 9395 - Hypothetical Protein, at 235,522 to 235,827 9395 mRNA_1028: 9396 - HMMPfam-Domain of unknown function (DUF2411)-PF10304,SUPERFAMILY--SSF48371, at 236,228 to 240,194 9396

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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234,880 + +0.4
235,005 - +0.0
235,013 + -0.2
235,271 - -0.1
235,484 + +0.4
235,488 + -1.3
235,492 - -0.7
235,594 - 9395 mRNA_1027 0.24 -1.4
235,783 - 9395 mRNA_1027 0.85 +0.6
235,938 + -1.6
236,028 + -0.6
236,031 - +0.0
236,031 - -0.9
236,034 + -0.4
236,047 + +0.9
236,193 + +1.6
236,344 + +0.0
236,358 + +0.9

Or see this region's nucleotide sequence