Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1037

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9404 and 9405 are separated by 113 nucleotides9405 and 9406 are separated by 583 nucleotides mRNA_1036: 9404 - K12590 RRP46, EXOSC5 exosome complex component RRP46, at 253,170 to 254,250 9404 mRNA_1037: 9405 - K12160 SUMO, SMT3 small ubiquitin-related modifier, at 254,364 to 255,172 9405 mRNA_1038: 9406 - HMMPfam-Protein of unknown function (DUF2034)-PF10356, at 255,756 to 256,586 9406

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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254,305 - -0.5
254,314 + -1.1
254,353 + +0.8
254,930 + 9405 mRNA_1037 0.70 -0.4
255,185 - -0.1
255,344 + +0.7
255,885 - 9406 mRNA_1038 0.16 -0.3

Or see this region's nucleotide sequence