Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1156

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9523 and 9524 are separated by 526 nucleotides9524 and 9525 are separated by 404 nucleotides mRNA_1155: 9523 - ProSiteProfiles-CBS domain profile.-PS51371,SUPERFAMILY--SSF54631, at 528,482 to 529,504 9523 mRNA_1156: 9524 - Hypothetical Protein, at 530,031 to 531,445 9524 mRNA_1157: 9525 - K14818 SQT1 ribosome assembly protein SQT1, at 531,850 to 533,484 9525

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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529,112 - 9523 mRNA_1155 0.62 -1.0
529,114 + 9523 mRNA_1155 0.62 +0.5
529,237 + 9523 mRNA_1155 0.74 -1.7
529,411 + -0.8
529,541 + -0.6
529,544 - -0.3
529,547 + +0.0
529,547 + -0.7
529,565 + -1.0
529,661 + -0.0
529,722 + +0.1
529,854 - +0.1
529,871 + -0.4
529,874 + +1.5
529,885 + +0.3
530,004 - -0.8
530,176 - 9524 mRNA_1156 0.10 -0.4
530,183 + 9524 mRNA_1156 0.11 -0.4
530,183 + 9524 mRNA_1156 0.11 +0.3
530,331 - 9524 mRNA_1156 0.21 -0.9
530,466 - 9524 mRNA_1156 0.31 -1.2
530,513 - 9524 mRNA_1156 0.34 -0.0
530,688 + 9524 mRNA_1156 0.46 -0.1
530,766 + 9524 mRNA_1156 0.52 -0.4
531,050 - 9524 mRNA_1156 0.72 -0.4
531,064 + 9524 mRNA_1156 0.73 -0.4
531,187 + 9524 mRNA_1156 0.82 +0.0
531,194 + 9524 mRNA_1156 0.82 +1.0
531,288 - 9524 mRNA_1156 0.89 -0.3
531,332 - +0.4
531,337 - -0.2
531,442 - +0.3
531,459 - -0.1
531,477 + -1.4
531,486 + -0.1
531,498 + +0.4
531,624 - -0.4
531,628 - -1.5
531,632 + -0.2
531,633 - -1.4
531,642 + -0.2
531,651 + -1.1

Or see this region's nucleotide sequence