Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1199

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9566 and 9567 are separated by 409 nucleotides9567 and 9568 are separated by 212 nucleotides mRNA_1198: 9566 - Hypothetical Protein, at 631,655 to 633,710 9566 mRNA_1199: 9567 - K02325 POLE2 DNA polymerase epsilon subunit 2, at 634,120 to 636,519 9567 mRNA_1200: 9568 - KOG3132 m3G-cap-specific nuclear import receptor (Snurportin1), at 636,732 to 638,216 9568

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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633,131 + 9566 mRNA_1198 0.72 +0.3
633,295 - 9566 mRNA_1198 0.80 +0.2
633,296 + 9566 mRNA_1198 0.80 +2.7
633,316 - 9566 mRNA_1198 0.81 -2.1
633,715 - -0.9
633,716 + +0.1
633,716 + -0.4
633,753 - +0.5
634,029 + +0.2
634,044 - +0.0
634,048 - -0.8
634,049 + +0.9
634,071 + -1.1
636,668 - -2.1
636,680 - -1.0
636,955 + 9568 mRNA_1200 0.15 +0.9
637,313 - 9568 mRNA_1200 0.39 -1.4
637,341 - 9568 mRNA_1200 0.41 +0.4
637,499 - 9568 mRNA_1200 0.52 -1.1

Or see this region's nucleotide sequence