Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1202

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9570 and 9571 are separated by 688 nucleotides mRNA_1202: 9570 - K11253 H3 histone H3, at 640,154 to 640,968 9570 mRNA_1203: 9571 - K01049 ACHE acetylcholinesterase, at 641,657 to 643,946 9571

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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639,300 - +0.7
639,315 - -1.0
639,322 + +0.0
639,325 + +0.2
639,731 - +0.3
639,736 - -1.0
639,737 + -1.2
639,738 + -0.8
639,740 + -0.3
639,744 + +0.1
639,746 - -0.0
639,749 - +0.6
639,754 - -2.2
639,759 - +0.2
639,761 - +0.9
639,763 + +0.0
639,764 + +0.9
639,765 + -0.5
639,766 + -0.4
639,766 - -0.2
639,767 - +0.3
639,769 - -1.2
639,771 - -1.8
639,780 - +0.0
639,781 + -0.3
639,781 + -0.1
639,783 + -0.4
639,790 - -1.8
639,810 + +0.1
639,817 - -0.3
639,852 - +0.7
639,854 - +0.5
639,876 - -0.5
639,876 - -0.7
640,019 - +0.5
640,033 - -0.2
640,280 + 9570 mRNA_1202 0.15 -2.4
640,325 + 9570 mRNA_1202 0.21 -0.7
640,465 + 9570 mRNA_1202 0.38 -0.3
640,469 + 9570 mRNA_1202 0.39 -1.3
641,169 + -0.2
641,177 - +0.3
641,207 - -3.3
641,310 - +1.0
641,318 - +0.1
641,322 - +0.4
641,350 + +1.0
641,365 + -0.2
641,370 + -0.1
641,392 + -0.9
641,395 + -1.2
641,408 - +2.3
641,414 - +0.7
641,417 - -0.3
641,422 + -0.0
641,429 + -0.2
641,485 + -0.3
641,491 + -0.5
641,493 - +0.7
641,494 + +0.2
641,510 + +0.2
641,527 + -0.4
641,528 + -1.2
641,544 + -0.2
641,562 - +0.4
641,594 + -0.9
641,614 - -0.0
641,628 - -1.0
641,667 - -0.2
641,849 + -1.4
641,921 + 9571 mRNA_1203 0.12 -0.8
641,948 + 9571 mRNA_1203 0.13 +0.7
641,957 + 9571 mRNA_1203 0.13 -0.9

Or see this region's nucleotide sequence