Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1204

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9571 and 9572 are separated by 569 nucleotides9572 and 9573 are separated by 521 nucleotides mRNA_1203: 9571 - K01049 ACHE acetylcholinesterase, at 641,657 to 643,946 9571 mRNA_1204: 9572 - K11253 H3 histone H3, at 644,516 to 645,336 9572 mRNA_1205: 9573 - Hypothetical Protein, at 645,858 to 646,499 9573

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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644,125 + -0.1
644,278 - -0.3
644,287 + +0.7
644,349 + +1.2
644,459 + +0.1
644,878 - 9572 mRNA_1204 0.44 -0.6
644,901 + 9572 mRNA_1204 0.47 +0.2
645,188 - 9572 mRNA_1204 0.82 -0.3
645,466 + -0.0
645,486 + -0.2
645,597 - +0.6
645,601 - -0.4
645,608 + +0.1
645,614 + -1.8
645,615 - +0.8
645,667 + -0.2
645,667 - +0.0
645,677 - +0.7
645,693 - -0.2
645,706 - +0.7
645,707 + +0.0
645,707 + +0.4
645,710 - +0.4
645,717 + -0.2
645,717 - -0.4
645,719 - -0.4
645,747 + -1.9
645,751 - -0.4
645,763 - -0.7
645,846 + -1.8
645,862 - -1.1
645,870 - -1.0
646,165 - 9573 mRNA_1205 0.48 -0.9
646,195 - 9573 mRNA_1205 0.52 -0.3
646,329 - 9573 mRNA_1205 0.73 -1.1

Or see this region's nucleotide sequence