Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1213

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9580 and 9581 are separated by 396 nucleotides9581 and 9582 are separated by 271 nucleotides9582 and 9583 are separated by 348 nucleotides mRNA_1212: 9580 - HMMPfam-Regulator of G protein signaling domain-PF00615,ProSiteProfiles-RGS domain profile.-PS50132,SMART-Regulator of G protein signalling domain-SM00315,SUPERFAMILY--SSF48097, at 663,108 to 664,692 9580 mRNA_1213: 9581 - KOG1205 Predicted dehydrogenase, at 665,089 to 665,972 9581 mRNA_1214: 9582 - Hypothetical Protein, at 666,244 to 666,423 9582 mRNA_1215: 9583 - Hypothetical Protein, at 666,772 to 668,801 9583

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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665,442 - 9581 mRNA_1213 0.40 +0.3
665,448 + 9581 mRNA_1213 0.41 -0.6
666,040 + -0.7
666,162 + -2.0
666,187 - +0.5
666,309 - 9582 mRNA_1214 0.36 -1.3
666,450 - +0.5

Or see this region's nucleotide sequence