Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1226

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9593 and 9594 are separated by 421 nucleotides9594 and 9595 are separated by 392 nucleotides mRNA_1225: 9593 - KOG2195 Transferrin receptor and related proteins containing the protease-associated (PA) domain, at 691,442 to 693,362 9593 mRNA_1226: 9594 - K01262 pepP Xaa-Pro aminopeptidase, at 693,784 to 696,236 9594 mRNA_1227: 9595 - KOG1318 Helix loop helix transcription factor EB, at 696,629 to 699,042 9595

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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693,224 + +0.9
693,390 + -0.5
693,395 - +1.0
693,521 - -1.6
693,523 + -0.1
693,587 + -0.8
693,710 + +1.1
693,815 - -0.3
694,254 - 9594 mRNA_1226 0.19 +1.3
694,281 + 9594 mRNA_1226 0.20 +0.8
694,346 + 9594 mRNA_1226 0.23 -0.5
694,829 - 9594 mRNA_1226 0.43 -2.4
694,889 + 9594 mRNA_1226 0.45 +0.2
695,421 - 9594 mRNA_1226 0.67 -0.5
695,730 - 9594 mRNA_1226 0.79 +0.4
696,201 - +0.5
696,304 + -0.5
696,348 - -1.0
696,602 - +1.5
696,809 + +1.1
696,818 - +0.3
696,940 - 9595 mRNA_1227 0.13 -0.5
696,948 + 9595 mRNA_1227 0.13 -0.6
696,965 + 9595 mRNA_1227 0.14 +0.4
697,024 - 9595 mRNA_1227 0.16 -0.6

Or see this region's nucleotide sequence