Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1324

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9691 and 9692 are separated by 526 nucleotides mRNA_1323: 9691 - Hypothetical Protein, at 929,685 to 931,310 9691 mRNA_1324: 9692 - Hypothetical Protein, at 931,837 to 933,855 9692

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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930,867 - 9691 mRNA_1323 0.73 -0.0
930,909 - 9691 mRNA_1323 0.75 +1.0
930,911 - 9691 mRNA_1323 0.75 -0.1
931,056 - 9691 mRNA_1323 0.84 -0.6
931,105 + 9691 mRNA_1323 0.87 -0.4
931,196 - +1.0
931,535 + +0.1
931,627 - +0.0
931,629 + +0.3
931,682 + +1.3
931,708 + -0.5
931,801 + +0.6
931,929 - -1.8
931,935 + -1.1
931,942 - -1.8
932,059 + 9692 mRNA_1324 0.11 -2.4
932,348 - 9692 mRNA_1324 0.25 -0.4
932,355 + 9692 mRNA_1324 0.26 -0.1
932,441 + 9692 mRNA_1324 0.30 +0.8
932,441 - 9692 mRNA_1324 0.30 +0.9
932,484 - 9692 mRNA_1324 0.32 +0.7
932,489 - 9692 mRNA_1324 0.32 +0.1
932,526 - 9692 mRNA_1324 0.34 -1.5
932,871 + 9692 mRNA_1324 0.51 -0.6
933,005 + 9692 mRNA_1324 0.58 -0.2
933,025 - 9692 mRNA_1324 0.59 -0.1
933,070 + 9692 mRNA_1324 0.61 -0.7
933,248 - 9692 mRNA_1324 0.70 -2.2
933,344 + 9692 mRNA_1324 0.75 -0.4
933,396 + 9692 mRNA_1324 0.77 -1.0
933,530 - 9692 mRNA_1324 0.84 -0.0
933,554 + 9692 mRNA_1324 0.85 -1.3
933,843 + -0.9
933,877 - -1.5
933,911 + -0.5
933,927 + -0.0
933,938 - -0.1
933,942 - -0.0
933,984 + +0.7
933,990 - -0.8
934,003 - +1.6
934,284 + -0.7
934,292 - -0.2
934,322 + +0.3
934,378 - +0.6
934,416 - +0.1
934,417 + -0.8
934,701 + -0.1
934,734 + +0.4
934,811 - +0.3

Or see this region's nucleotide sequence