Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1358

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9725 and 9726 are separated by 198 nucleotides mRNA_1357: 9725 - BLAST ATP-citrate synthase [Microbotryum lychnidis-dioicae ..., at 79,515 to 80,146 9725 mRNA_1358: 9726 - K01648 ACLY ATP citrate (pro-S)-lyase, at 80,345 to 84,761 9726

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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79,373 - -0.3
79,423 + +0.2
79,756 - 9725 mRNA_1357 0.38 +0.4
79,851 + 9725 mRNA_1357 0.53 -0.4
80,007 + 9725 mRNA_1357 0.78 -0.2
80,028 + 9725 mRNA_1357 0.81 +0.1
80,181 - +1.0
80,187 - -1.9
80,316 + -0.0
80,318 - -0.3
83,849 + 9726 mRNA_1358 0.79 +0.9
84,835 - -0.4
84,864 - +1.7
84,865 + +0.8
84,873 + -0.1
84,898 + -0.0
84,902 + -1.9
84,921 + -0.2
84,922 + -0.1
84,923 + +0.6
84,925 - -1.1
84,925 - -0.6
84,934 + -0.6
84,942 - -0.8
85,049 - -1.1
85,051 - +0.0
85,060 - +0.2
85,064 + +0.5
85,087 - -2.3
85,197 - -0.2
85,217 - -1.0
85,217 + +1.5
85,223 + +0.8
85,341 - -0.5
85,358 + +0.4
85,363 - -0.1
85,363 + -1.2
85,369 + +0.1
85,375 - -0.9
85,375 + -0.5
85,376 - +0.0
85,377 + +0.8
85,388 - +0.2
85,399 - -0.1
85,399 + -0.2
85,403 - -0.7
85,404 + -2.0
85,570 - -0.6
85,584 + -0.4
85,602 + +0.0
85,682 + -0.0

Or see this region's nucleotide sequence