Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1363

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9731 and 9732 are separated by 779 nucleotides mRNA_1363: 9731 - K11147 DHRS4 dehydrogenase/reductase SDR family member 4, at 98,069 to 99,768 9731 mRNA_1364: 9732 - SUPERFAMILY--SSF48452, at 100,548 to 102,445 9732

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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97,398 - -0.1
97,433 + -1.6
97,563 + -1.5
97,720 + -0.1
97,730 - -1.2
97,840 - +0.7
97,848 + -0.1
97,849 - +2.1
97,854 - -0.1
97,859 + +0.1
97,860 - -0.2
97,873 - +0.5
97,873 + -0.5
97,876 - -0.5
97,877 + -0.7
97,884 + -1.2
97,886 + +0.6
97,888 + -0.1
97,996 - +1.0
98,001 + -0.5
98,002 - +0.9
98,002 + +1.2
98,005 + +0.6
98,006 - +1.8
98,007 + -0.7
98,008 + -0.8
98,166 + -0.3
98,325 + 9731 mRNA_1363 0.15 +0.0
98,349 - 9731 mRNA_1363 0.16 -0.5
98,460 + 9731 mRNA_1363 0.23 +0.2
98,492 + 9731 mRNA_1363 0.25 -0.3
98,623 - 9731 mRNA_1363 0.33 -1.5
98,706 + 9731 mRNA_1363 0.37 +0.5
98,761 - 9731 mRNA_1363 0.41 +0.3
98,915 + 9731 mRNA_1363 0.50 -1.4
99,047 - 9731 mRNA_1363 0.58 -0.0
99,303 + 9731 mRNA_1363 0.73 +0.8
99,605 + -0.2
99,769 - -0.7
99,905 - -0.7
99,910 + -0.5
99,921 + +0.3
99,927 + +0.3
99,929 + +0.5
99,956 - +0.2
100,052 + +0.1
100,211 - -0.8
100,243 - -1.1
100,386 + -0.9

Or see this region's nucleotide sequence