Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1446

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9814 and 9815 are separated by 687 nucleotides mRNA_1446: 9814 - BLAST Mucin-17 [Rhizoctonia solani], at 303,145 to 306,587 9814 mRNA_1447: 9815 - ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 307,275 to 311,482 9815

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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302,264 + +0.5
302,284 + -0.7
302,403 - +0.0
302,446 - +0.5
302,461 + -0.8
302,484 + -0.1
302,502 - -0.3
302,512 - -0.5
302,535 - +0.3
302,587 - -1.4
302,594 + -0.9
302,650 + -1.0
302,682 + -0.1
302,704 - +0.8
302,726 + +0.1
302,740 - +0.1
302,797 + -0.7
302,828 + +0.7
302,836 - -0.5
302,844 - +0.3
302,844 - -0.7
302,844 - -0.3
302,851 - -0.2
302,854 + -0.9
302,859 + -1.6
302,860 - -0.6
302,861 - -0.1
302,862 + +0.2
302,868 - -0.2
302,874 - +0.0
302,889 + -0.1
302,890 - +0.2
302,914 - +0.2
302,916 + -1.6
302,931 + +0.6
302,931 - -0.1
302,933 - -0.3
302,933 - +0.1
302,933 - +0.2
302,938 + +0.4
302,939 + -0.0
302,944 - -0.0
302,947 + +1.1
302,950 - +0.2
302,950 + +1.2
302,951 - +0.7
302,955 + -0.6
302,957 + +0.5
302,959 - +0.4
302,959 + +0.4
302,959 - -0.1
302,964 + +0.4
302,978 + +0.9
303,083 + -0.4
303,091 + +0.1
303,099 + +0.5
303,102 - +0.7
303,106 + -2.1
304,148 - 9814 mRNA_1446 0.29 -0.4
306,550 + +0.2
306,798 + -0.8
307,047 - -0.9
307,059 + -1.6
307,214 + +2.5
307,215 - +0.3
307,518 + +1.2

Or see this region's nucleotide sequence