Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1524

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9891 and 9892 are separated by 234 nucleotides9892 and 9893 are separated by 133 nucleotides mRNA_1523: 9891 - Hypothetical Protein, at 504,257 to 504,927 9891 mRNA_1524: 9892 - K07178 RIOK1 RIO kinase 1, at 505,162 to 507,225 9892 mRNA_1525: 9893 - K08267 RICTOR rapamycin-insensitive companion of mTOR, at 507,359 to 512,878 9893

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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504,212 + -0.5
504,353 - 9891 mRNA_1523 0.14 +0.2
504,362 - 9891 mRNA_1523 0.16 +1.5
504,363 + 9891 mRNA_1523 0.16 -0.3
504,367 - 9891 mRNA_1523 0.16 -1.3
504,367 + 9891 mRNA_1523 0.16 -0.2
504,522 + 9891 mRNA_1523 0.39 -0.2
504,806 - 9891 mRNA_1523 0.82 -0.3
504,826 + 9891 mRNA_1523 0.85 -1.4
505,105 + -0.5
505,107 + -0.1
505,127 - -0.0
505,128 + -0.3
505,128 + +0.4
505,140 - +0.3
505,150 - -0.4
507,286 - -1.7
507,310 + -0.3
507,353 - +0.3
507,495 - +1.0

Or see this region's nucleotide sequence