Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1534

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9901 and 9902 are separated by 214 nucleotides9902 and 9903 are separated by 459 nucleotides mRNA_1533: 9901 - K04649 HIP2, UBC1 ubiquitin-conjugating enzyme (huntingtin interacting protein 2), at 528,782 to 530,057 9901 mRNA_1534: 9902 - K12493 ARFGAP2_3 ADP-ribosylation factor GTPase-activating protein 2/3, at 530,272 to 532,362 9902 mRNA_1535: 9903 - K12471 EPN epsin, at 532,822 to 534,645 9903

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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529,799 - 9901 mRNA_1533 0.80 -0.7
529,821 - 9901 mRNA_1533 0.81 -0.9
530,259 - +0.3
531,239 - 9902 mRNA_1534 0.46 -0.2
531,247 + 9902 mRNA_1534 0.47 +0.5
531,979 - 9902 mRNA_1534 0.82 +0.1
531,996 + 9902 mRNA_1534 0.82 -1.3
532,413 - -0.3
532,415 - -0.6
532,419 - -0.2
532,426 + -0.2
532,428 - -0.3
532,433 + -0.5
532,435 + +0.6
532,442 + +0.2
532,444 + +0.3
532,573 - -0.7
532,576 - -0.9
532,578 - -0.8
532,580 + +1.0
532,714 + -1.0
532,717 - -1.0
532,718 + +0.9
532,720 - -0.4
532,741 + -0.7
533,032 + 9903 mRNA_1535 0.12 -0.7
533,325 + 9903 mRNA_1535 0.28 -1.7

Or see this region's nucleotide sequence