Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1622

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9989 and 9990 are separated by 329 nucleotides9990 and 9991 are separated by 482 nucleotides mRNA_1621: 9989 - Hypothetical Protein, at 741,895 to 743,431 9989 mRNA_1622: 9990 - K17738 ARD D-arabinitol 2-dehydrogenase, at 743,761 to 745,808 9990 mRNA_1623: 9991 - Hypothetical Protein, at 746,291 to 747,597 9991

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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742,923 + 9989 mRNA_1621 0.67 -0.0
743,027 - 9989 mRNA_1621 0.74 -0.2
743,070 - 9989 mRNA_1621 0.76 +0.1
743,397 + +0.8
743,677 + +0.4
744,956 + 9990 mRNA_1622 0.58 -0.1
745,093 + 9990 mRNA_1622 0.65 +0.0
745,113 - 9990 mRNA_1622 0.66 +1.8
745,114 + 9990 mRNA_1622 0.66 -0.9
745,142 + 9990 mRNA_1622 0.67 -0.2
745,156 - 9990 mRNA_1622 0.68 +0.2
745,172 + 9990 mRNA_1622 0.69 -0.3
745,192 - 9990 mRNA_1622 0.70 +0.7
745,307 - 9990 mRNA_1622 0.75 -0.1
745,580 + 9990 mRNA_1622 0.89 +0.1
745,601 + 9990 mRNA_1622 0.90 -0.4
745,701 - -0.1
745,747 - -0.0
745,749 + -1.3
745,750 - +0.4
745,751 + +0.0
745,754 + -0.9
745,757 + -1.5
745,759 - -0.4
745,771 - +0.5
745,771 - +1.5
745,793 + -0.1
745,804 - -1.3
745,832 - -0.4
745,837 + -0.5
745,922 + +0.2
745,995 + -0.7
746,010 - +0.4
746,018 + -0.4
746,179 + -0.4
746,478 - 9991 mRNA_1623 0.14 -0.1

Or see this region's nucleotide sequence