Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1690

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10057 and 10058 are separated by 321 nucleotides mRNA_1689: 10057 - KOG1286 Amino acid transporters, at 897,050 to 899,959 10057 mRNA_1690: 10058 - BLAST putative transmembrane protein [Rhizoctonia solani 123E], at 900,281 to 902,715 10058

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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899,401 - 10057 mRNA_1689 0.81 +0.9
899,708 + -0.8
899,864 + -2.1
900,288 + -2.2
900,723 - 10058 mRNA_1690 0.18 -0.6
901,034 - 10058 mRNA_1690 0.31 -2.1
901,631 + 10058 mRNA_1690 0.55 -4.4
901,869 - 10058 mRNA_1690 0.65 -2.4
901,909 - 10058 mRNA_1690 0.67 -1.1
902,225 - 10058 mRNA_1690 0.80 -2.5
902,471 - 10058 mRNA_1690 0.90 -3.6
902,715 - +0.7
902,740 - -0.7
902,743 - +0.4
902,752 + +0.6
902,758 - +1.2
902,891 - -0.3
902,898 - -0.6
902,915 - -2.3
903,628 - -0.7

Or see this region's nucleotide sequence