Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1718

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10085 and 10086 are separated by 306 nucleotides10086 and 10087 are separated by 785 nucleotides mRNA_1717: 10085 - HMMPfam-Per1-like-PF04080, at 24,723 to 26,291 10085 mRNA_1718: 10086 - HMMPfam-Cytochrome C oxidase copper chaperone (COX17)-PF05051,SUPERFAMILY--SSF47072, at 26,598 to 27,052 10086 mRNA_1719: 10087 - Hypothetical Protein, at 27,838 to 28,571 10087

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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25,674 - 10085 mRNA_1717 0.61 +0.7
25,964 + 10085 mRNA_1717 0.79 +0.6
26,071 + 10085 mRNA_1717 0.86 -0.4
26,135 + -2.3
26,229 + +0.4
26,263 - +0.1
26,363 + +0.5
26,377 + +0.7
26,383 - +0.2
26,390 + -0.7
26,413 + +0.2
26,493 - -1.3
26,509 - +0.6
26,511 - +0.2
26,520 + -0.9
27,099 + +0.5
27,101 - +0.3
27,102 + +1.6
27,105 - +1.0
27,136 + -0.8
27,226 - -0.1
27,527 - +0.5
27,536 + -0.6
27,660 - +0.8
27,683 - -1.2
27,694 - -1.1
27,711 - -1.9
27,777 + +1.2
27,983 - 10087 mRNA_1719 0.20 -0.9

Or see this region's nucleotide sequence