Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1799

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10166 and 10167 are separated by 149 nucleotides10167 and 10168 are separated by 149 nucleotides mRNA_1798: 10166 - KOG0725 Reductases with broad range of substrate specificities, at 225,398 to 226,777 10166 mRNA_1799: 10167 - KOG2489 Transmembrane protein, at 226,927 to 229,515 10167 mRNA_1800: 10168 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 229,665 to 231,047 10168

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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225,955 + 10166 mRNA_1798 0.40 -0.1
226,375 + 10166 mRNA_1798 0.71 +0.4
226,382 + 10166 mRNA_1798 0.71 -1.0
226,465 + 10166 mRNA_1798 0.77 -0.4
227,104 - +0.3
227,305 + 10167 mRNA_1799 0.15 -0.3
227,717 + 10167 mRNA_1799 0.31 -1.2
228,134 + 10167 mRNA_1799 0.47 -0.0
228,137 - 10167 mRNA_1799 0.47 +0.5
228,276 - 10167 mRNA_1799 0.52 -0.2
228,419 - 10167 mRNA_1799 0.58 -0.9
228,707 + 10167 mRNA_1799 0.69 -1.1
228,859 - 10167 mRNA_1799 0.75 -0.1
228,970 - 10167 mRNA_1799 0.79 +0.0
229,001 + 10167 mRNA_1799 0.80 +0.3
229,128 - 10167 mRNA_1799 0.85 +2.5
229,129 + 10167 mRNA_1799 0.85 +2.3
229,129 - 10167 mRNA_1799 0.85 -0.2
229,148 + 10167 mRNA_1799 0.86 -0.3
229,265 - +0.7
229,415 + +0.3
229,417 + -1.1
229,420 + -1.0
229,438 + +1.0
229,443 + -0.1
229,467 - +0.3
229,467 - -0.4
229,470 + +0.2
229,473 - +0.1
229,475 - +0.6
229,476 - +0.2
229,476 - -0.6
229,481 - -0.3
229,481 + -0.3
229,482 - +0.3
229,487 + +0.3
229,488 + +0.1
229,492 + -0.2
229,492 + -0.0
229,505 + -0.9
229,511 + -1.0
229,613 - +0.9
229,618 + -0.0
229,626 + +0.2
229,627 - +0.9
229,628 + -1.0
229,628 - +0.8
229,635 + -0.2
229,662 + -0.2
229,667 - -0.4
229,786 - +0.7
229,786 + -0.0
229,910 - 10168 mRNA_1800 0.18 +0.5
230,079 - 10168 mRNA_1800 0.30 +0.7
230,084 + 10168 mRNA_1800 0.30 +0.3
230,215 + 10168 mRNA_1800 0.40 -0.6
230,335 + 10168 mRNA_1800 0.48 +0.1
230,398 - 10168 mRNA_1800 0.53 -0.6
230,489 + 10168 mRNA_1800 0.60 +0.3
230,489 + 10168 mRNA_1800 0.60 +0.5

Or see this region's nucleotide sequence