Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1933

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10300 and 10301 are separated by 435 nucleotides10301 and 10302 are separated by 500 nucleotides mRNA_1932: 10300 - BLAST family 69 glycosyltransferase [Melampsora larici-..., at 544,727 to 545,015 10300 mRNA_1933: 10301 - Hypothetical Protein, at 545,451 to 545,690 10301 mRNA_1934: 10302 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 546,191 to 548,410 10302

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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544,483 + +2.3
544,489 + -2.3
544,505 + -0.1
544,509 + +1.0
544,630 + +0.8
544,667 - +0.4
544,770 + 10300 mRNA_1932 0.15 +0.4
544,900 - 10300 mRNA_1932 0.60 +0.1
544,943 + 10300 mRNA_1932 0.75 +0.7
545,378 + +1.4
545,507 - 10301 mRNA_1933 0.23 -0.1
545,522 + 10301 mRNA_1933 0.30 -0.0
545,531 + 10301 mRNA_1933 0.33 -1.6
545,539 + 10301 mRNA_1933 0.37 +0.7
545,627 + 10301 mRNA_1933 0.73 -1.1
545,632 + 10301 mRNA_1933 0.75 +0.5
545,656 - 10301 mRNA_1933 0.85 -0.2
545,677 + +0.0
545,678 + +1.0
545,789 - +0.7
545,801 - -0.2
545,804 - -0.4
545,808 + +0.1
545,808 + +1.2
545,815 - +0.1
545,818 + -0.0
545,819 + +0.2
545,843 + -0.5
545,845 + +0.4
545,846 + +1.1
545,869 - +0.2
545,932 + +0.3
545,965 - -1.4
545,983 + -0.6
545,986 - -0.2
546,008 - +0.2
546,269 - +0.5
546,683 + 10302 mRNA_1934 0.22 -0.1
546,687 - 10302 mRNA_1934 0.22 -1.6

Or see this region's nucleotide sequence