Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2108

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10475 and 10476 are separated by 221 nucleotides mRNA_2107: 10475 - K01918 panC pantoate--beta-alanine ligase, at 93,856 to 95,198 10475 mRNA_2108: 10476 - Hypothetical Protein, at 95,420 to 96,044 10476

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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94,528 + 10475 mRNA_2107 0.50 +1.8
94,720 - 10475 mRNA_2107 0.64 +0.8
94,786 - 10475 mRNA_2107 0.69 -0.8
94,811 - 10475 mRNA_2107 0.71 +0.7
94,956 - 10475 mRNA_2107 0.82 -0.8
95,086 + -0.0
95,088 - +0.0
95,103 + +0.8
95,174 - -1.1
95,347 + +0.3
95,407 - +1.4
95,448 + +2.0
95,631 + 10476 mRNA_2108 0.34 +0.9
95,640 - 10476 mRNA_2108 0.35 +0.1
95,959 + 10476 mRNA_2108 0.86 -0.8
95,961 - 10476 mRNA_2108 0.87 -2.0
95,971 + 10476 mRNA_2108 0.88 -1.1
96,008 - +0.7
96,015 + +1.7
96,107 + +1.0
96,128 - -0.4
96,130 - -0.1
96,144 - -1.4
96,148 + -1.2
96,221 + +0.9
96,260 - -0.8
96,267 - -1.4
96,272 + +1.1
96,408 + -0.7
96,439 + +0.2
96,614 + -0.3
96,617 + +0.9

Or see this region's nucleotide sequence