Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2145

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10512 and 10513 are separated by 476 nucleotides10513 and 10514 are separated by 248 nucleotides mRNA_2144: 10512 - Hypothetical Protein, at 182,114 to 183,256 10512 mRNA_2145: 10513 - HMMPfam-Protein of unknown function DUF89-PF01937,SUPERFAMILY--SSF111321, at 183,733 to 185,513 10513 mRNA_2146: 10514 - K15100 SLC25A1, CTP solute carrier family 25 (mitochondrial citrate transporter), member 1, at 185,762 to 187,254 10514

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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182,847 + 10512 mRNA_2144 0.64 -0.3
182,850 - 10512 mRNA_2144 0.64 +0.3
182,851 - 10512 mRNA_2144 0.64 -0.3
183,008 + 10512 mRNA_2144 0.78 -1.1
183,220 - -0.2
183,220 + -2.7
183,308 + -0.2
183,311 - +0.4
183,312 + +0.3
183,315 - +1.1
183,407 - +0.2
183,500 - -1.3
183,565 - +0.1
183,582 - +1.1
183,701 - +0.1
183,741 - -0.4
183,743 + +0.5
183,757 - -0.3
183,806 + -0.3
183,809 - -1.4
183,815 + +0.3
183,904 - +1.1
183,970 + 10513 mRNA_2145 0.13 +1.8
183,972 - 10513 mRNA_2145 0.13 +0.4
184,009 + 10513 mRNA_2145 0.15 -1.6
184,015 - 10513 mRNA_2145 0.16 -0.0
184,027 + 10513 mRNA_2145 0.17 +0.2
184,074 - 10513 mRNA_2145 0.19 +1.6
184,140 + 10513 mRNA_2145 0.23 -1.6
184,146 + 10513 mRNA_2145 0.23 -1.2
184,192 + 10513 mRNA_2145 0.26 +1.0
184,254 + 10513 mRNA_2145 0.29 -1.1
184,272 - 10513 mRNA_2145 0.30 -1.2
184,276 - 10513 mRNA_2145 0.30 -0.4
184,671 + 10513 mRNA_2145 0.53 +1.4
184,676 - 10513 mRNA_2145 0.53 +0.2
184,755 + 10513 mRNA_2145 0.57 +0.1
184,776 + 10513 mRNA_2145 0.59 -1.2
184,855 + 10513 mRNA_2145 0.63 -0.5
184,868 + 10513 mRNA_2145 0.64 -1.6
184,875 + 10513 mRNA_2145 0.64 -2.0
184,955 + 10513 mRNA_2145 0.69 +0.2
184,989 + 10513 mRNA_2145 0.71 -3.5
185,050 - 10513 mRNA_2145 0.74 +1.0
185,151 + 10513 mRNA_2145 0.80 +1.0
185,162 - 10513 mRNA_2145 0.80 -2.0
185,163 + 10513 mRNA_2145 0.80 -0.2
185,185 - 10513 mRNA_2145 0.82 +0.3
185,195 + 10513 mRNA_2145 0.82 +0.7
185,249 - 10513 mRNA_2145 0.85 +2.1
185,253 + 10513 mRNA_2145 0.85 -0.5
185,316 + 10513 mRNA_2145 0.89 +1.1
185,439 + -0.5
185,507 - -0.0
185,656 + +0.2
185,681 - -0.5
185,718 - -0.3
185,720 + +0.3
185,759 - -0.2
185,759 - -0.4
185,835 + +0.5
185,871 + -1.1
185,921 - 10514 mRNA_2146 0.11 -1.0
185,972 + 10514 mRNA_2146 0.14 -0.3
185,982 - 10514 mRNA_2146 0.15 +0.4
186,136 + 10514 mRNA_2146 0.25 +0.2
186,415 - 10514 mRNA_2146 0.44 +0.8
186,469 - 10514 mRNA_2146 0.47 +0.5

Or see this region's nucleotide sequence