Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2230

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10597 and 10598 are separated by 679 nucleotides10598 and 10599 are separated by 345 nucleotides mRNA_2229: 10597 - HMMPfam-Hsp70 protein-PF00012,PRINTS-70kDa heat shock protein signature-PR00301,ProSitePatterns-Heat shock hsp70 proteins family signature 2.-PS00329,ProSitePatterns-Heat shock hsp70 proteins family signature 3.-PS01036,SUPERFAMILY--SSF100934,SUPERFAMILY--SSF53067, at 416,574 to 419,223 10597 mRNA_2230: 10598 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 419,903 to 421,996 10598 mRNA_2231: 10599 - Hypothetical Protein, at 422,342 to 422,815 10599

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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419,183 - +0.1
420,067 - -0.5
421,196 - 10598 mRNA_2230 0.62 +0.7
422,290 + +0.6

Or see this region's nucleotide sequence