Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2327

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10694 and 10695 are separated by 565 nucleotides10695 and 10696 are separated by 108 nucleotides mRNA_2326: 10694 - K03439 trmB, METTL1 tRNA (guanine-N7-)-methyltransferase, at 614,539 to 615,888 10694 mRNA_2327: 10695 - Hypothetical Protein, at 616,454 to 617,684 10695 mRNA_2328: 10696 - KOG0192 Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs, at 617,793 to 619,842 10696

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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615,935 - -0.1
615,962 - -0.5
616,081 - +0.4
616,124 + +0.2
616,219 - +0.6
616,231 + +0.8
616,431 - -2.3
616,515 + +0.2
616,699 + 10695 mRNA_2327 0.20 +0.0
616,936 - 10695 mRNA_2327 0.39 -1.8
617,384 - 10695 mRNA_2327 0.76 -0.6
617,541 + 10695 mRNA_2327 0.88 -0.4
617,660 - -2.3
617,664 + -0.3
617,816 + -1.4
617,983 + +0.0
617,986 + +0.7
618,115 + 10696 mRNA_2328 0.16 +0.3
618,138 - 10696 mRNA_2328 0.17 +0.6
618,265 - 10696 mRNA_2328 0.23 -0.1
618,301 + 10696 mRNA_2328 0.25 -1.4
618,401 - 10696 mRNA_2328 0.30 -0.2
618,431 + 10696 mRNA_2328 0.31 +0.1
618,449 - 10696 mRNA_2328 0.32 -0.8
618,457 + 10696 mRNA_2328 0.32 -1.1
618,508 + 10696 mRNA_2328 0.35 +1.0
618,665 - 10696 mRNA_2328 0.43 +0.9

Or see this region's nucleotide sequence