Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2383

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10750 and 10751 are separated by 590 nucleotides10751 and 10752 are separated by 19 nucleotides mRNA_2382: 10750 - HMMPfam-Zinc-binding loop region of homing endonuclease-PF05551,SUPERFAMILY--SSF54060, at 760,691 to 762,074 10750 mRNA_2383: 10751 - Hypothetical Protein, at 762,665 to 764,140 10751 mRNA_2384: 10752 - K11600 RRP41, EXOSC4, SKI6 exosome complex component RRP41, at 764,160 to 765,511 10752

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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761,828 - 10750 mRNA_2382 0.82 -1.0
761,973 - -0.9
761,981 + -0.4
762,117 + +0.2
762,141 + +1.7
762,261 + +0.0
762,294 - +0.6
762,426 + +0.2
762,555 - +0.2
762,579 + +0.3
762,582 + +0.0
762,710 - -0.4
762,720 - +0.2
762,725 - +1.2
762,731 - +0.2
762,741 - +0.2
762,871 + 10751 mRNA_2383 0.14 +0.6
762,877 + 10751 mRNA_2383 0.14 -0.9
762,902 - 10751 mRNA_2383 0.16 +0.4
763,002 - 10751 mRNA_2383 0.23 +0.5
763,007 + 10751 mRNA_2383 0.23 +1.3
763,038 - 10751 mRNA_2383 0.25 -0.4
763,041 + 10751 mRNA_2383 0.25 -0.7
763,047 + 10751 mRNA_2383 0.26 -0.7
763,051 + 10751 mRNA_2383 0.26 +1.0
763,056 - 10751 mRNA_2383 0.26 -0.1
763,064 - 10751 mRNA_2383 0.27 -0.3
763,072 + 10751 mRNA_2383 0.28 +0.0
763,299 - 10751 mRNA_2383 0.43 +0.2
763,326 - 10751 mRNA_2383 0.45 -2.3
763,497 + 10751 mRNA_2383 0.56 -1.0
763,651 - 10751 mRNA_2383 0.67 +0.9
763,803 + 10751 mRNA_2383 0.77 +1.7
763,931 - 10751 mRNA_2383 0.86 +1.1
763,945 + 10751 mRNA_2383 0.87 -0.0
764,097 + +0.4
764,112 - +0.7

Or see this region's nucleotide sequence