Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2475

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10842 and 10843 are separated by 321 nucleotides mRNA_2474: 10842 - KOG0603 Ribosomal protein S6 kinase, at 234,258 to 235,956 10842 mRNA_2475: 10843 - BLAST CAMK protein kinase [Microbotryum lychnidis-dioicae p..., at 236,278 to 238,719 10843

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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235,296 - 10842 mRNA_2474 0.61 +0.6
235,303 - 10842 mRNA_2474 0.62 +0.1
235,346 + 10842 mRNA_2474 0.64 +1.6
235,725 - 10842 mRNA_2474 0.86 -1.2
235,738 - 10842 mRNA_2474 0.87 +1.5
236,183 - +1.4
236,291 + -2.1
236,410 - +0.2
236,472 - +0.2
236,473 + +0.3
236,488 + -1.1
236,843 - 10843 mRNA_2475 0.23 -1.1
237,037 - 10843 mRNA_2475 0.31 -1.3
237,445 + 10843 mRNA_2475 0.48 -0.9
237,697 - 10843 mRNA_2475 0.58 +1.1
238,079 - 10843 mRNA_2475 0.74 -2.9
238,132 + 10843 mRNA_2475 0.76 -0.7
238,338 + 10843 mRNA_2475 0.84 -0.5
238,589 - +0.0
238,589 - +1.2
238,647 + +0.1
238,648 - -0.7
238,948 - +0.5
238,993 + -2.0
239,035 - +0.5
239,047 - -1.1
239,300 + -2.2

Or see this region's nucleotide sequence