Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2485

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10852 and 10853 are separated by 87 nucleotides10853 and 10854 are separated by 391 nucleotides mRNA_2484: 10852 - K11498 CENPE centromeric protein E, at 257,699 to 260,992 10852 mRNA_2485: 10853 - K07760 CDK cyclin-dependent kinase, at 261,080 to 262,482 10853 mRNA_2486: 10854 - KOG3134 Predicted membrane protein, at 262,874 to 263,661 10854

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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260,231 + 10852 mRNA_2484 0.77 -1.1
260,285 - 10852 mRNA_2484 0.79 +0.6
260,327 + 10852 mRNA_2484 0.80 -0.2
260,557 - 10852 mRNA_2484 0.87 -1.4
260,571 - 10852 mRNA_2484 0.87 +0.5
260,582 + 10852 mRNA_2484 0.88 +0.4
260,793 + -0.7
260,850 + -2.3
261,008 + +1.4
261,016 - +0.2
261,100 + -0.9
261,487 + 10853 mRNA_2485 0.29 -1.2
261,612 + 10853 mRNA_2485 0.38 -1.9
261,805 + 10853 mRNA_2485 0.52 -1.3
262,677 + -1.9
262,724 + +0.3
262,759 + +0.1
262,811 - +0.0
262,959 - 10854 mRNA_2486 0.11 +0.1
262,960 + 10854 mRNA_2486 0.11 -2.4
262,967 - 10854 mRNA_2486 0.12 -0.3
263,096 - 10854 mRNA_2486 0.28 -0.2
263,407 - 10854 mRNA_2486 0.68 +0.0
263,438 - 10854 mRNA_2486 0.72 -1.4

Or see this region's nucleotide sequence