Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2508

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10875 and 10876 are separated by 904 nucleotides10876 and 10877 are separated by 432 nucleotides mRNA_2507: 10875 - K11232 YPD1 osomolarity two-component system, phosphorelay intermediate protein YPD1, at 314,960 to 315,808 10875 mRNA_2508: 10876 - BLAST proteophosphoglycan ppg4 [Lichtheimia corymbifera JMR..., at 316,713 to 320,410 10876 mRNA_2509: 10877 - HMMPfam-PI31 proteasome regulator-PF08577,HMMPfam-PI31 proteasome regulator N-terminal-PF11566, at 320,843 to 322,229 10877

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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316,297 - +0.1
316,327 + +0.5
316,347 + -0.1
316,353 - +0.2
316,415 - +0.3
316,471 + -1.9
316,488 - +0.2
316,503 + +0.6
316,503 + +0.4
316,503 + +1.5
316,505 - -0.8
316,513 + -0.2
316,517 - -0.5
316,530 + -0.7
316,531 - +0.3
316,536 + -0.7
316,536 - +0.4
316,548 + -0.5
316,618 - -0.0
316,687 - +0.5
316,703 + -1.3
317,382 + 10876 mRNA_2508 0.18 +0.3
318,169 + 10876 mRNA_2508 0.39 +0.3
318,717 - 10876 mRNA_2508 0.54 +2.1
318,746 - 10876 mRNA_2508 0.55 +0.7
318,748 - 10876 mRNA_2508 0.55 +0.0
319,240 + 10876 mRNA_2508 0.68 +0.3
319,250 + 10876 mRNA_2508 0.69 +0.5
319,302 + 10876 mRNA_2508 0.70 -2.2
319,322 + 10876 mRNA_2508 0.71 -0.0
319,325 - 10876 mRNA_2508 0.71 -0.2
319,325 - 10876 mRNA_2508 0.71 +0.6
319,325 - 10876 mRNA_2508 0.71 -0.6
319,355 + 10876 mRNA_2508 0.71 -0.6
319,375 + 10876 mRNA_2508 0.72 -1.4
319,441 - 10876 mRNA_2508 0.74 -0.4
319,925 - 10876 mRNA_2508 0.87 +1.1
320,162 - -1.3
320,246 - -1.6
320,343 - -0.3
320,347 + +0.4
320,371 - -1.2
320,406 + -0.3
320,431 - +1.9
320,431 - -0.1
320,622 - +0.6
320,623 + -0.5
320,662 + -0.5
320,791 - +0.6
320,942 - +0.2
320,946 + +0.7
321,253 + 10877 mRNA_2509 0.30 +0.7
321,258 - 10877 mRNA_2509 0.30 +0.8
321,351 - 10877 mRNA_2509 0.37 -0.1

Or see this region's nucleotide sequence