Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2532

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10899 and 10900 are separated by 173 nucleotides10900 and 10901 are separated by 247 nucleotides mRNA_2531: 10899 - KOG2816 Predicted transporter ADD1 (major facilitator superfamily), at 372,269 to 375,397 10899 mRNA_2532: 10900 - KOG2961 Predicted hydrolase (HAD superfamily), at 375,571 to 377,208 10900 mRNA_2533: 10901 - K10706 SETX, ALS4 senataxin, at 377,456 to 384,141 10901

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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374,774 + 10899 mRNA_2531 0.80 -1.6
375,306 + +0.1
375,339 + -0.2
375,345 - -0.3
375,473 - -0.4
375,501 + +0.5
375,506 + +0.9
375,561 - -1.8
376,774 + 10900 mRNA_2532 0.73 -0.7
376,809 + 10900 mRNA_2532 0.76 +0.9
377,103 + -1.4
377,194 - -0.9
377,214 + +1.0
377,248 - +1.9
377,275 - -0.7
377,475 - -3.7
377,549 - -1.0
377,569 + +0.8
377,841 - -0.8
377,960 - +0.7
378,173 + 10901 mRNA_2533 0.11 -1.2

Or see this region's nucleotide sequence