Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2592

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10959 and 10960 are separated by 58 nucleotides10960 and 10961 are separated by 513 nucleotides mRNA_2591: 10959 - Hypothetical Protein, at 550,194 to 551,919 10959 mRNA_2592: 10960 - HMMPfam-Protein of unknown function (DUF1762)-PF08574, at 551,978 to 553,842 10960 mRNA_2593: 10961 - K15115 SLC25A32, MFT solute carrier family 25 (mitochondrial folate transporter), member 32, at 554,356 to 555,895 10961

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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551,028 - 10959 mRNA_2591 0.48 -0.2
551,030 + 10959 mRNA_2591 0.48 -0.2
551,042 + 10959 mRNA_2591 0.49 -0.3
551,174 - 10959 mRNA_2591 0.57 +0.5
551,181 - 10959 mRNA_2591 0.57 -0.5
551,186 + 10959 mRNA_2591 0.57 +0.2
551,649 + 10959 mRNA_2591 0.84 -0.8
551,705 + 10959 mRNA_2591 0.88 +0.1
551,797 - -1.7
551,979 + +0.5
553,279 - 10960 mRNA_2592 0.70 -1.1
553,594 - 10960 mRNA_2592 0.87 -0.8
553,805 + -0.4
553,849 - +1.9
554,094 + +0.6
554,106 - +0.1
554,106 - +0.9
554,123 - +0.9
554,128 - -0.8
554,136 - +0.6
554,148 + +0.7
554,150 - +0.1
554,157 - +2.0
554,158 - -1.7
554,294 - -0.6
554,294 - -0.5

Or see this region's nucleotide sequence