Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2607

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10974 and 10975 are separated by 289 nucleotides mRNA_2606: 10974 - Hypothetical Protein, at 581,408 to 582,467 10974 mRNA_2607: 10975 - KOG4102 Uncharacterized conserved protein, at 582,757 to 583,405 10975

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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581,845 - 10974 mRNA_2606 0.41 +0.1
581,950 + 10974 mRNA_2606 0.51 +0.2
582,063 - 10974 mRNA_2606 0.62 +0.9
582,124 - 10974 mRNA_2606 0.68 -1.1
582,284 + 10974 mRNA_2606 0.83 +1.6
582,416 - +0.9
582,461 - +0.2
582,531 + -0.9
582,549 + +0.1
582,567 + +2.1
582,585 - -0.8
582,592 + -0.1
582,717 + -0.7
582,718 + +0.3
583,473 + +2.0
583,479 + -0.1
583,584 - -1.1
583,626 + -0.3
583,891 - -1.2
583,895 + -0.9
584,385 + -1.5

Or see this region's nucleotide sequence