Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2613

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10980 and 10981 are separated by 239 nucleotides10981 and 10982 are separated by 571 nucleotides mRNA_2612: 10980 - HMMPfam-Protein kinase C terminal domain-PF00433, at 591,842 to 594,740 10980 mRNA_2613: 10981 - K00223 ERG4 Delta24(24(1))-sterol reductase, at 594,980 to 596,945 10981 mRNA_2614: 10982 - K18050 PRKCE novel protein kinase C epsilon type, at 597,517 to 601,558 10982

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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594,349 - 10980 mRNA_2612 0.86 -0.3
594,359 + 10980 mRNA_2612 0.87 -0.1
594,373 + 10980 mRNA_2612 0.87 +0.0
594,385 - 10980 mRNA_2612 0.88 +0.0
594,538 - +0.8
594,644 - -1.6
594,800 + +0.8
594,806 + -0.3
594,812 - +1.0
594,957 - +0.2
594,968 + +0.6
594,972 - +0.6
595,260 + 10981 mRNA_2613 0.14 -1.2
596,992 - +0.8
597,003 - -0.2
597,050 - -0.5
597,285 + +0.1
597,287 + +0.1
597,291 - -0.7
597,293 - -2.5
597,299 - -0.0
597,302 - +0.5
597,317 - +0.3
597,447 + +0.1
597,475 + +0.5
597,838 - -1.9

Or see this region's nucleotide sequence