Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2629

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10996 and 10997 are separated by 405 nucleotides10997 and 10998 are separated by 260 nucleotides mRNA_2628: 10996 - K09468 MSN2_4 zinc finger protein MSN2/4, at 625,936 to 628,159 10996 mRNA_2629: 10997 - Hypothetical Protein, at 628,565 to 629,191 10997 mRNA_2630: 10998 - KOG1581 UDP-galactose transporter related protein, at 629,452 to 632,288 10998

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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627,582 + 10996 mRNA_2628 0.74 +0.2
627,845 - 10996 mRNA_2628 0.86 +0.3
628,056 - -1.1
628,154 + -1.7
628,203 - -0.6
628,220 - -0.2
628,281 - +0.4
628,477 - -0.1
628,531 - +0.8
628,717 - 10997 mRNA_2629 0.24 +0.2
628,805 - 10997 mRNA_2629 0.38 +0.4
628,947 + 10997 mRNA_2629 0.61 +0.4
628,970 - 10997 mRNA_2629 0.65 +0.8
628,971 - 10997 mRNA_2629 0.65 +1.1
629,017 - 10997 mRNA_2629 0.72 -1.8
629,095 - 10997 mRNA_2629 0.85 +0.0
629,107 - 10997 mRNA_2629 0.86 +0.2
629,121 - 10997 mRNA_2629 0.89 -1.1
629,130 + -0.4
629,155 - -1.1
629,181 - +2.3
629,183 + +0.5
629,193 - +1.2
629,223 - +0.6
629,234 + +1.9
629,238 + -0.0
629,238 + +0.1
629,241 + -0.0
629,242 + -1.2
629,254 - +0.8
629,254 + -0.0
629,255 - -0.5
629,260 - -0.8
629,261 + +0.4
629,261 + +0.9
629,267 - +0.6
629,276 + -0.8
629,282 - -0.8
629,285 - +0.4
629,287 - +0.4
629,295 + +1.0
629,313 - +0.7
629,314 + +0.9
629,393 + +0.1
629,426 - +0.7
629,555 - +0.7
629,755 + 10998 mRNA_2630 0.11 -0.1
629,760 + 10998 mRNA_2630 0.11 +0.4
629,774 + 10998 mRNA_2630 0.11 +0.5
629,876 - 10998 mRNA_2630 0.15 +1.4
629,890 + 10998 mRNA_2630 0.15 -0.8
629,916 - 10998 mRNA_2630 0.16 +0.2
629,920 - 10998 mRNA_2630 0.16 -0.3
630,150 - 10998 mRNA_2630 0.25 -0.9
630,154 - 10998 mRNA_2630 0.25 -0.2

Or see this region's nucleotide sequence