Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2654

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11022 and 11023 are separated by 403 nucleotides mRNA_2654: 11022 - K00864 glpK, GK glycerol kinase, at 685,161 to 688,307 11022 mRNA_2655: 11023 - HMMPfam-Protein of unknown function (DUF1479)-PF07350,SUPERFAMILY--SSF51197, at 688,711 to 690,606 11023

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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684,181 - +0.3
684,182 - +0.2
684,312 - +1.0
684,328 + +2.1
684,329 - +1.7
684,475 - -0.0
684,480 + -0.5
684,588 + +0.3
684,596 - -2.6
684,774 - +0.9
684,903 + -0.0
684,903 - -1.9
684,906 + -0.6
684,907 + +1.7
684,922 + +0.2
684,923 - +0.3
684,935 + +1.8
685,038 + +0.7
685,038 - -0.1
685,038 - -2.5
685,039 + -1.3
685,045 - -0.2
685,048 + +0.3
685,063 - +1.2
685,068 + -0.5
685,068 + -0.2
685,068 + +0.5
685,069 + +0.1
685,072 + +0.9
685,081 + +0.8
685,081 + -0.7
685,097 + -0.3
685,097 - +0.8
685,103 + +0.2
685,107 - +0.3
685,111 + -0.1
685,120 - +0.0
685,128 - +1.8
685,203 - -0.6
685,274 + +0.5
685,274 + -1.5
685,277 + -1.2
685,289 + -0.2
685,298 + +0.9
685,385 - +0.2
685,431 - +0.2
685,433 + -3.1
685,510 - 11022 mRNA_2654 0.11 +0.2
685,562 + 11022 mRNA_2654 0.13 -0.2
685,710 - 11022 mRNA_2654 0.17 +0.6
686,277 - 11022 mRNA_2654 0.35 +0.5
686,288 - 11022 mRNA_2654 0.36 -4.1
686,336 - 11022 mRNA_2654 0.37 +0.2
686,606 + 11022 mRNA_2654 0.46 +0.2
686,711 - 11022 mRNA_2654 0.49 +1.1
686,727 - 11022 mRNA_2654 0.50 -1.5
686,736 - 11022 mRNA_2654 0.50 +0.1
687,027 + 11022 mRNA_2654 0.59 -1.4
687,180 + 11022 mRNA_2654 0.64 +0.6
688,160 + -1.1
688,230 - -0.6
688,323 + -0.2
688,374 - +0.3
688,410 - -0.3
688,573 - -1.0
688,574 - -3.6
688,577 - +0.3
688,582 + -0.5
688,593 + +0.6
688,594 - -0.1
688,597 - +0.2
688,610 + -0.3
688,627 + +0.7
688,645 + -1.1
688,645 + +1.3
688,662 - -0.0
688,687 - -0.4
688,776 - -1.1
688,781 + -0.6
689,121 + 11023 mRNA_2655 0.22 +0.9

Or see this region's nucleotide sequence