Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2755

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11122 and 11123 are separated by 268 nucleotides11123 and 11124 are separated by 345 nucleotides mRNA_2754: 11122 - SUPERFAMILY--SSF50249, at 141,143 to 143,248 11122 mRNA_2755: 11123 - K20247 EGT2 hercynylcysteine sulfoxide lyase, at 143,517 to 145,999 11123 mRNA_2756: 11124 - KOG2450 Aldehyde dehydrogenase, at 146,345 to 148,269 11124

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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142,882 - 11122 mRNA_2754 0.83 +2.5
142,993 - 11122 mRNA_2754 0.88 -1.3
143,013 - 11122 mRNA_2754 0.89 +0.7
143,024 + 11122 mRNA_2754 0.89 -1.0
143,161 - +0.2
143,170 - -1.3
143,238 + +1.4
143,324 + -1.0
143,340 - +0.2
143,466 - +0.5
143,482 + +0.0
143,809 + 11123 mRNA_2755 0.12 -1.1
143,997 + 11123 mRNA_2755 0.19 +0.2
144,167 + 11123 mRNA_2755 0.26 +0.7
144,167 + 11123 mRNA_2755 0.26 +0.2
144,328 - 11123 mRNA_2755 0.33 +0.2
144,342 - 11123 mRNA_2755 0.33 +0.8
144,351 - 11123 mRNA_2755 0.34 +0.8
144,379 + 11123 mRNA_2755 0.35 -0.8
144,518 + 11123 mRNA_2755 0.40 -0.1
144,524 - 11123 mRNA_2755 0.41 -0.1
144,601 + 11123 mRNA_2755 0.44 -0.8
144,767 - 11123 mRNA_2755 0.50 -1.5
144,775 - 11123 mRNA_2755 0.51 -0.9
144,776 - 11123 mRNA_2755 0.51 -0.5
145,058 - 11123 mRNA_2755 0.62 +1.3
145,059 - 11123 mRNA_2755 0.62 +0.7
145,202 + 11123 mRNA_2755 0.68 +0.2
145,206 - 11123 mRNA_2755 0.68 +0.2
145,270 + 11123 mRNA_2755 0.71 -1.5
145,499 - 11123 mRNA_2755 0.80 +0.7
145,517 + 11123 mRNA_2755 0.81 +0.6
145,541 + 11123 mRNA_2755 0.82 -0.9
145,552 + 11123 mRNA_2755 0.82 +1.0
145,571 - 11123 mRNA_2755 0.83 -0.4
145,598 - 11123 mRNA_2755 0.84 +1.0
145,643 + 11123 mRNA_2755 0.86 +0.2
145,929 + +0.8
145,951 + -1.6
146,098 + +1.1
146,100 - +1.1
146,222 - +0.3
146,266 - -0.5
146,266 + -0.7
146,269 + -1.4
146,280 - -0.8
146,284 - +0.7
146,332 + +1.0
146,406 + -1.0
146,421 - +1.3
146,445 - +0.2
146,588 + 11124 mRNA_2756 0.13 -1.6
146,830 + 11124 mRNA_2756 0.25 -0.2
146,899 + 11124 mRNA_2756 0.29 -0.4

Or see this region's nucleotide sequence