Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2771

Experiment: Sorted No BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11138 and 11139 are separated by 809 nucleotides11139 and 11140 are separated by 190 nucleotides mRNA_2770: 11138 - KOG0400 40S ribosomal protein S13, at 173,510 to 175,017 11138 mRNA_2771: 11139 - KOG4072 Signal peptidase complex, subunit SPC25, at 175,827 to 177,001 11139 mRNA_2772: 11140 - SUPERFAMILY--SSF56112, at 177,192 to 178,295 11140

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
remove
174,870 + +0.3
174,885 - -0.6
175,208 + -0.4
175,595 - -0.2
175,603 + -2.1
175,613 + -4.1
175,733 - -0.5
175,760 - +0.3
175,779 + +1.2
175,795 + -0.4
175,897 - +0.8
175,898 + -1.0
175,909 - +0.3
175,948 + 11139 mRNA_2771 0.10 -1.2
176,015 + 11139 mRNA_2771 0.16 -0.0
176,079 - 11139 mRNA_2771 0.21 -0.6
176,203 - 11139 mRNA_2771 0.32 -1.2
176,204 - 11139 mRNA_2771 0.32 +0.8
176,771 - 11139 mRNA_2771 0.80 +0.5
177,068 + -0.2
177,259 - -0.1
177,515 - 11140 mRNA_2772 0.29 +0.3
177,566 - 11140 mRNA_2772 0.34 -0.9
177,662 - 11140 mRNA_2772 0.43 -1.1
177,827 + 11140 mRNA_2772 0.58 +0.6
177,832 - 11140 mRNA_2772 0.58 -1.1
177,869 - 11140 mRNA_2772 0.61 +0.0
177,974 + 11140 mRNA_2772 0.71 +0.1

Or see this region's nucleotide sequence