Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2876

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11243 and 11244 are separated by 300 nucleotides11244 and 11245 are separated by 227 nucleotides mRNA_2875: 11243 - HMMPfam-NMT1/THI5 like-PF09084,SUPERFAMILY--SSF53850, at 420,566 to 422,079 11243 mRNA_2876: 11244 - K18715 NUP159 nucleoporin NUP159, at 422,380 to 429,450 11244 mRNA_2877: 11245 - Hypothetical Protein, at 429,678 to 431,024 11245

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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421,423 - 11243 mRNA_2875 0.57 +1.7
421,590 - 11243 mRNA_2875 0.68 +0.4
421,591 + 11243 mRNA_2875 0.68 +0.5
421,870 - 11243 mRNA_2875 0.86 -0.2
421,899 + 11243 mRNA_2875 0.88 -0.8
421,899 + 11243 mRNA_2875 0.88 -1.1
421,903 + 11243 mRNA_2875 0.88 -0.1
422,210 - -0.2
422,315 - -0.1
422,343 - -1.4
428,041 - 11244 mRNA_2876 0.80 +1.1
428,258 - 11244 mRNA_2876 0.83 +1.9
428,262 + 11244 mRNA_2876 0.83 -0.7
428,485 + 11244 mRNA_2876 0.86 +2.1
428,992 - +0.9
429,040 + +0.1
429,065 - -1.2
429,498 + -1.9
429,577 - +1.7
429,599 + +0.5
429,614 - -0.8
429,643 - +1.0
430,046 + 11245 mRNA_2877 0.27 +0.4
430,091 - 11245 mRNA_2877 0.31 +1.8
430,225 + 11245 mRNA_2877 0.41 +0.2
430,330 + 11245 mRNA_2877 0.48 -0.2

Or see this region's nucleotide sequence