Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2883

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11251 and 11252 are separated by 307 nucleotides mRNA_2883: 11251 - K16675 ZDHHC9_14_18 palmitoyltransferase ZDHHC9/14/18, at 445,200 to 447,494 11251 mRNA_2884: 11252 - K10838 XPC xeroderma pigmentosum group C-complementing protein, at 447,802 to 451,973 11252

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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444,257 + -1.2
444,361 + -1.5
444,388 - -0.6
444,393 - -0.9
444,474 - -1.7
444,645 + -0.1
444,669 - +0.2
444,828 - +0.4
444,965 + +0.0
445,110 + -0.2
445,112 + -0.5
445,139 - -1.3
445,521 - 11251 mRNA_2883 0.14 +0.4
445,638 - 11251 mRNA_2883 0.19 -0.2
445,880 - 11251 mRNA_2883 0.30 -0.4
445,886 + 11251 mRNA_2883 0.30 +0.6
446,275 - 11251 mRNA_2883 0.47 +1.7
447,014 - 11251 mRNA_2883 0.79 +0.4
447,118 + 11251 mRNA_2883 0.84 +1.4
447,123 - 11251 mRNA_2883 0.84 +1.2
447,423 - -2.9
447,430 + -1.2
447,586 - -0.4
447,597 + +0.1
447,723 + -1.1
447,748 + -1.1
447,872 + -1.1
447,890 + -2.3
447,985 - +0.9
448,040 + -2.4
448,320 + 11252 mRNA_2884 0.12 -1.5
448,329 + 11252 mRNA_2884 0.13 -0.6

Or see this region's nucleotide sequence