Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2909

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11276 and 11277 are separated by 421 nucleotides11277 and 11278 are separated by 220 nucleotides mRNA_2908: 11276 - KOG3098 Uncharacterized conserved protein, at 512,850 to 515,031 11276 mRNA_2909: 11277 - Hypothetical Protein, at 515,453 to 516,872 11277 mRNA_2910: 11278 - K03657 uvrD, pcrA DNA helicase II / ATP-dependent DNA helicase PcrA, at 517,093 to 520,320 11278

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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514,659 - 11276 mRNA_2908 0.83 -0.6
514,674 + 11276 mRNA_2908 0.84 +0.4
514,722 - 11276 mRNA_2908 0.86 -0.3
514,777 + 11276 mRNA_2908 0.88 -0.1
515,006 + +0.3
515,591 - -0.9
515,591 - +0.6
515,656 - 11277 mRNA_2909 0.14 +0.5
515,787 + 11277 mRNA_2909 0.24 -0.6
516,147 + 11277 mRNA_2909 0.49 +0.8
516,596 - 11277 mRNA_2909 0.80 -0.1
516,762 - -0.9
516,767 - +2.1
516,902 - -0.4
516,904 + -0.1
516,930 + -1.0
516,935 - +1.0
516,951 + +0.7
517,238 + -0.2
517,251 + +0.1
517,415 + -0.1
517,636 + 11278 mRNA_2910 0.17 -2.1
517,659 + 11278 mRNA_2910 0.18 -0.4
517,667 + 11278 mRNA_2910 0.18 -1.1

Or see this region's nucleotide sequence