Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2928

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11295 and 11296 are separated by 160 nucleotides11296 and 11297 are separated by 496 nucleotides mRNA_2927: 11295 - K07955 ARL8 ADP-ribosylation factor-like protein 8, at 573,302 to 574,331 11295 mRNA_2928: 11296 - Hypothetical Protein, at 574,492 to 576,496 11296 mRNA_2929: 11297 - Hypothetical Protein, at 576,993 to 577,700 11297

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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573,660 - 11295 mRNA_2927 0.35 +0.9
574,183 + 11295 mRNA_2927 0.86 -0.1
574,194 + 11295 mRNA_2927 0.87 +1.0
574,314 - -0.5
574,318 - +0.0
574,328 + +0.2
574,460 + -0.2
574,460 - -0.3
574,584 - -1.0
574,620 - -2.6
574,633 - +0.8
574,637 + -0.4
574,644 - -0.1
574,648 - +0.7
574,776 - 11296 mRNA_2928 0.14 +0.1
574,808 - 11296 mRNA_2928 0.16 -1.3
574,898 - 11296 mRNA_2928 0.20 +0.5
575,021 - 11296 mRNA_2928 0.26 -0.2
575,062 - 11296 mRNA_2928 0.28 +0.4
575,064 - 11296 mRNA_2928 0.29 +0.3
575,194 - 11296 mRNA_2928 0.35 -1.5
575,199 + 11296 mRNA_2928 0.35 +1.2
575,548 + 11296 mRNA_2928 0.53 -1.8
575,827 + 11296 mRNA_2928 0.67 +0.3
576,030 - 11296 mRNA_2928 0.77 +1.1
576,225 - 11296 mRNA_2928 0.86 -1.0
576,245 - 11296 mRNA_2928 0.87 +0.9
576,620 + +0.3
576,639 - -0.1
576,904 + -0.4
576,912 + +1.1
577,194 + 11297 mRNA_2929 0.28 +0.4

Or see this region's nucleotide sequence