Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2967

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11334 and 11335 are separated by 750 nucleotides11335 and 11336 are separated by 155 nucleotides mRNA_2966: 11334 - KOG3238 Chloride ion current inducer protein, at 669,918 to 671,056 11334 mRNA_2967: 11335 - Hypothetical Protein, at 671,807 to 673,227 11335 mRNA_2968: 11336 - Hypothetical Protein, at 673,383 to 681,780 11336

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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670,994 + +0.1
671,084 + -0.0
671,169 + +0.9
671,172 - +2.3
671,172 - +1.0
671,174 + -1.4
671,176 - -0.1
671,178 + -0.5
671,281 + -2.0
671,288 - -0.5
671,600 - +1.4
671,708 - +0.1
671,735 + +1.8
671,738 - -1.0
671,748 + -0.5
671,845 + +1.3
671,893 + +0.9
671,901 + -0.4
671,901 + +1.0
671,902 + -0.5
671,999 + 11335 mRNA_2967 0.14 +0.1
672,000 - 11335 mRNA_2967 0.14 +0.8
672,010 + 11335 mRNA_2967 0.14 -1.2
672,049 - 11335 mRNA_2967 0.17 +0.3
672,053 - 11335 mRNA_2967 0.17 +0.5
672,056 - 11335 mRNA_2967 0.18 -0.6
672,130 - 11335 mRNA_2967 0.23 -1.4
672,209 - 11335 mRNA_2967 0.28 -0.1
672,227 - 11335 mRNA_2967 0.30 +0.3
672,275 + 11335 mRNA_2967 0.33 -0.6
672,281 + 11335 mRNA_2967 0.33 +1.1
672,292 + 11335 mRNA_2967 0.34 +0.1
672,432 - 11335 mRNA_2967 0.44 +0.8
672,440 + 11335 mRNA_2967 0.45 +0.1
672,457 - 11335 mRNA_2967 0.46 -0.4
672,563 - 11335 mRNA_2967 0.53 -0.2
672,594 + 11335 mRNA_2967 0.55 +0.8
672,627 + 11335 mRNA_2967 0.58 +0.6
672,766 - 11335 mRNA_2967 0.67 +0.3
672,800 - 11335 mRNA_2967 0.70 +0.5
672,806 + 11335 mRNA_2967 0.70 +1.2
672,859 - 11335 mRNA_2967 0.74 -1.2
673,013 - 11335 mRNA_2967 0.85 +2.8
673,030 + 11335 mRNA_2967 0.86 +0.6
673,186 - -2.2
673,219 + -0.2
673,343 + +0.8
673,353 + +0.3
673,441 - -0.5
673,555 - +0.1
673,614 - +0.1
673,624 + -1.8
673,627 - +2.0
673,645 + +3.0
673,807 - +1.3
673,841 - -1.8
673,983 - -0.2
673,995 + +1.3
674,045 - +0.2
674,086 - -0.4
674,122 + +0.4

Or see this region's nucleotide sequence