Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2982

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11350 and 11351 are separated by 244 nucleotides mRNA_2982: 11350 - Hypothetical Protein, at 7,297 to 8,646 11350 mRNA_2983: 11351 - K00993 EPT1 ethanolaminephosphotransferase, at 8,891 to 11,294 11351

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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6,309 + +0.9
6,396 + +1.2
6,397 - -0.1
6,485 - +0.2
6,789 - -2.7
6,789 + +0.0
6,825 - +2.2
6,832 + -0.6
6,970 + -0.6
6,972 - -1.4
7,033 + -0.2
7,092 + +0.1
7,097 + +0.4
7,098 + +2.7
7,826 + 11350 mRNA_2982 0.39 -1.1
7,843 + 11350 mRNA_2982 0.40 -0.6
7,931 + 11350 mRNA_2982 0.47 -0.3
8,208 - 11350 mRNA_2982 0.67 -0.4
8,233 - 11350 mRNA_2982 0.69 +0.4
8,236 - 11350 mRNA_2982 0.70 -1.6
8,397 - 11350 mRNA_2982 0.81 -1.9
8,399 + 11350 mRNA_2982 0.82 -0.4
8,400 + 11350 mRNA_2982 0.82 +1.0
8,450 + 11350 mRNA_2982 0.85 -0.9
8,489 + 11350 mRNA_2982 0.88 +0.7
8,510 + 11350 mRNA_2982 0.90 +0.8
8,622 + +3.1
8,669 + +0.9
8,737 + -1.2
8,803 - -1.0
8,815 + -0.9
9,041 - -0.3
9,260 - 11351 mRNA_2983 0.15 -0.0
9,277 + 11351 mRNA_2983 0.16 +0.8
9,279 - 11351 mRNA_2983 0.16 -0.9
9,296 - 11351 mRNA_2983 0.17 -0.4
9,357 + 11351 mRNA_2983 0.19 +0.3
9,383 + 11351 mRNA_2983 0.20 +2.2
9,414 + 11351 mRNA_2983 0.22 +0.9
9,476 - 11351 mRNA_2983 0.24 +0.0
9,646 + 11351 mRNA_2983 0.31 +0.9

Or see this region's nucleotide sequence