Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3091

Experiment: Sorted No BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11458 and 11459 overlap by 84 nucleotides11459 and 11460 are separated by 614 nucleotides mRNA_3090: 11458 - K03062 PSMC1, RPT2 26S proteasome regulatory subunit T2, at 294,926 to 296,826 11458 mRNA_3091: 11459 - K13303 SGK2 serum/glucocorticoid-regulated kinase 2, at 296,743 to 299,433 11459 mRNA_3092: 11460 - KOG4784 Uncharacterized conserved protein, at 300,048 to 303,992 11460

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
remove
295,895 - 11458 mRNA_3090 0.51 -0.1
295,975 - 11458 mRNA_3090 0.55 +0.2
296,131 - 11458 mRNA_3090 0.63 +0.2
296,280 + 11458 mRNA_3090 0.71 -0.6
296,307 + 11458 mRNA_3090 0.73 +0.2
296,441 - 11458 mRNA_3090 0.80 +0.5
296,535 + 11458 mRNA_3090 0.85 +1.7
296,585 + 11458 mRNA_3090 0.87 -0.4
296,678 - +0.0
296,858 - -1.6
296,877 - +0.2
297,195 - 11459 mRNA_3091 0.17 -0.2
297,324 + 11459 mRNA_3091 0.22 -0.6
297,437 - 11459 mRNA_3091 0.26 -2.9
297,582 - 11459 mRNA_3091 0.31 -0.6
297,582 + 11459 mRNA_3091 0.31 -0.4
297,631 + 11459 mRNA_3091 0.33 -0.5
298,048 + 11459 mRNA_3091 0.48 +0.3
298,052 - 11459 mRNA_3091 0.49 -0.0
298,307 - 11459 mRNA_3091 0.58 -0.5
298,493 + 11459 mRNA_3091 0.65 -0.0
298,567 + 11459 mRNA_3091 0.68 -0.1
298,903 + 11459 mRNA_3091 0.80 -0.2
299,218 + +0.1
299,324 - +2.3
299,349 - +0.7
299,472 + +1.8
299,478 - -1.6
299,512 + -1.0
299,627 - +0.2
299,627 - -1.7
299,627 - -0.5
299,633 + +0.2
299,637 - +0.5
299,638 - +0.6
299,638 + -0.5
299,644 + -0.1
299,644 - -0.8
299,648 + +1.1
299,656 - -1.4
299,656 - -0.7
299,783 + +1.9
299,797 + -1.3
299,906 - +0.4
299,974 + +1.6
300,098 - -1.0
300,099 + +0.7
300,110 + +0.2
300,223 - -1.4
300,228 - +0.2
300,246 + -0.4
300,251 + +1.2
300,349 + -0.7

Or see this region's nucleotide sequence